| 3 | Oyster Bay Branch | ||
| 6 | Long Beach Branch | ||
| 9 | Port Washington Branch | ||
| 4 | Ronkonkoma Branch | ||
| 10 | Port Jefferson Branch | ||
| 11 | Belmont Park | ||
| 13 | Greenport Service | ||
| 1 | Babylon Branch | ||
| 7 | Far Rockaway Branch | ||
| 8 | West Hempstead Branch | ||
| 12 | City Terminal Zone | ||
| 5 | Montauk Branch | ||
| 2 | Hempstead Branch |