| 441442 | 441/442 | Marblehead - Wonderland Station | 1 |
| 350 | 350 | North Burlington - Alewife Station | 1 |
| CapeFlyer | CapeFLYER | 3 | |
| Mattapan | Mattapan Line | 1 | |
| 238 | 238 | Holbrook/Randolph Station - Quincy Center Station | 1 |
| CR-Greenbush | Greenbush Line | 1 | |
| 220 | 220 | Hingham Depot - Quincy Center Station | 1 |
| CR-Franklin | Franklin/Foxboro Line | 1 | |
| 18 | 18 | Ashmont Station - Andrew Station | 1 |
| 32 | 32 | Wolcott Square - Forest Hills Station | 1 |
| 97 | 97 | Malden Center Station - Wellington Station | 1 |
| Shuttle-Generic-Elevator | Elevator Shuttle | 1 | |
| 465 | 465 | Danvers Square - Salem Depot via Liberty Tree Mall | 1 |
| Shuttle-Generic-Franklin | Franklin/Foxboro Line Shuttle | 1 | |
| Boat-F1 | Hingham Ferry | 1 | |
| 38 | 38 | Wren Street - Forest Hills Station | 1 |
| 89 | 89 | Clarendon Hill or Davis Station - Sullivan Square Station | 1 |
| Green-B | B | Green Line B | 1 |
| 36 | 36 | Millennium Park or VA Hospital - Forest Hills Station | 1 |
| 51 | 51 | Reservoir Station - Forest Hills Station | 1 |
| 90 | 90 | Davis Station - Assembly Row | 1 |
| 411 | 411 | Kennedy Drive or Jack Satter House - Malden Center Station | 1 |
| 217 | 217 | Quincy Center Station - Ashmont Station | 1 |
| 456 | 456 | Salem Depot - Central Square, Lynn | 1 |
| 435 | 435 | Salem Depot or Liberty Tree Mall - Central Square, Lynn via Peabody Square | 1 |
| 749 | SL5 | Nubian Station - Temple Place | 1 |
| CR-Providence | Providence/Stoughton Line | 1 | |
| Boat-F10 | Harbor Loop Ferry | 1 | |
| 69 | 69 | Harvard Square - Lechmere Station | 1 |
| 505 | 505 | Waltham Center - Federal Street & Franklin Street | 1 |
| Shuttle-Generic-Haverhill | Haverhill Line Shuttle | 1 | |
| Shuttle-Generic-CommuterRail | Commuter Rail Shuttle | 1 | |
| 230 | 230 | Montello Station - Quincy Center Station | 1 |
| 714 | 714 | Hull Ferry - Hingham Depot | 1 |
| CR-Fairmount | Fairmount Line | 1 | |
| 442 | 442 | Marblehead - Wonderland Station via Humphrey Street | 1 |
| Shuttle-Generic-Worcester | Framingham/Worcester Line Shuttle | 1 | |
| 8 | 8 | Harbor Point - Kenmore Station | 1 |
| Shuttle-Generic-Green-Trunk | Green Line Subway Shuttle | 1 | |
| 35 | 35 | Dedham Mall or Stimson Street - Forest Hills Station | 1 |
| 11 | 11 | City Point - Chauncy Street & Summer Street | 1 |
| 34 | 34 | Dedham Mall - Forest Hills Station | 1 |
| 85 | 85 | Assembly Row - Ruggles Station | 1 |
| Shuttle-Generic-Greenbush | Greenbush Line Shuttle | 1 | |
| 100 | 100 | Elm Street - Wellington Station | 1 |
| 236 | 236 | South Shore Plaza - Quincy Center Station | 1 |
| CR-Haverhill | Haverhill Line | 1 | |
| 28 | 28 | Mattapan Station - Ruggles Station | 1 |
| 50 | 50 | Cleary Square - Forest Hills Station | 1 |
| 354 | 354 | North Burlington - State Street, Boston | 1 |
| 504 | 504 | Watertown Yard - Federal Street & Franklin Street | 1 |
| 88 | 88 | Clarendon Hill - Lechmere Station | 1 |
| 55 | 55 | West Fenway - Arlington Station | 1 |
| 424 | 424 | Eastern Avenue & Essex Street - Wonderland Station | 1 |
| 31 | 31 | Mattapan Station - Forest Hills Station via Morton Street | 1 |
| 708 | CT3 | Beth Israel Deaconess Hospital - Andrew Station | 1 |
| 94 | 94 | Medford Square - Davis Station | 1 |
| Boat-Lynn | Lynn Ferry | 1 | |
| Shuttle-Generic-Red-Braintree | Red Line Braintree Shuttle | 1 | |
| 108 | 108 | Linden Square - Wellington Station | 1 |
| 131 | 131 | Melrose Highlands - Malden Center Station | 1 |
| 80 | 80 | Arlington Center - Lechmere Station | 1 |
| Shuttle-Generic-Mattapan | Mattapan Line Shuttle | 1 | |
| 44 | 44 | Jackson Square Station - Ruggles Station | 1 |
| 134 | 134 | North Woburn - Wellington Station | 1 |
| 104 | 104 | Malden Center Station - Airport Station | 1 |
| Boat-F7 | Quincy Ferry | 1 | |
| 37 | 37 | Baker Street & Vermont Street - Forest Hills Station | 1 |
| 62 | 62 | Bedford VA Hospital - Alewife Station | 1 |
| 553 | 553 | Roberts - Newton Corner | 1 |
| 34E | 34E | Walpole Center - Forest Hills Station | 1 |
| Boat-F4 | Charlestown Ferry | 1 | |
| Boat-F6 | Winthrop Ferry | 1 | |
| 30 | 30 | Mattapan Station - Forest Hills Station via Cummins Highway and Roslindale Square | 1 |
| 15 | 15 | Fields Corner Station - Ruggles Station | 1 |
| Shuttle-Generic-Blue | Blue Line Shuttle | 1 | |
| 86 | 86 | Harvard Square - Reservoir Station | 1 |
| 429 | 429 | Northgate Shopping Center - Central Square, Lynn | 1 |
| Shuttle-Generic-Green-E | Green Line E Shuttle | 1 | |
| 14 | 14 | Roslindale Square - Heath Street | 1 |
| 10 | 10 | City Point - Arlington Station | 1 |
| 111 | 111 | Woodlawn - Haymarket Station | 1 |
| 77 | 77 | Arlington Heights - Harvard Station | 1 |
| 120 | 120 | Orient Heights Station - Jeffries Point | 1 |
| 78 | 78 | Arlmont Village - Harvard Station | 1 |
| 245 | 245 | Quincy Center Station - Mattapan Station | 1 |
| 114 | 114 | Market Basket - Maverick Station | 1 |
| 87 | 87 | Arlington Center - Lechmere Station | 1 |
| 26 | 26 | Ashmont Station - Norfolk Street Loop | 1 |
| Blue | Blue Line | 1 | |
| Red | Red Line | 1 | |
| 52 | 52 | Dedham Mall - Watertown Yard | 1 |
| 22 | 22 | Ashmont Station - Ruggles Station via Talbot Avenue | 1 |
| 436 | 436 | Liberty Tree Mall - Central Square, Lynn via Goodwin Circle | 1 |
| 33 | 33 | River Street & Milton Street - Mattapan Station | 1 |
| Boat-F8 | Winthrop/Quincy Ferry | 1 | |
| 121 | 121 | Wood Island Station - Maverick Station | 1 |
| Green-E | E | Green Line E | 1 |
| 746 | SLW | Silver Line Way - South Station | 1 |
| CR-Fitchburg | Fitchburg Line | 1 | |
| 57 | 57 | Watertown Yard - Kenmore Station | 1 |
| 743 | SL3 | Chelsea Station - South Station | 1 |
| Shuttle-Generic-Green | Green Line Shuttle | 1 | |
| 202 | 202 | Fields Corner Loop via Adams Street | 1 |
| Shuttle-Generic-Kingston | Kingston Line Shuttle | 1 | |
| CR-Worcester | Framingham/Worcester Line | 1 | |
| 29 | 29 | Mattapan Station - Jackson Square Station | 1 |
| 39 | 39 | Forest Hills Station - Back Bay Station | 1 |
| 67 | 67 | Turkey Hill - Alewife Station | 1 |
| 106 | 106 | Lebanon Loop - Wellington Station | 1 |
| 17 | 17 | Fields Corner Station - Andrew Station | 1 |
| 351 | 351 | Bedford Woods Drive - Third Avenue, Burlington | 1 |
| 66 | 66 | Harvard Square - Nubian Station | 1 |
| Shuttle-Generic-CommuterRail-North | North Side Commuter Rail Shuttle | 1 | |
| 9 | 9 | City Point - Copley Square | 1 |
| 8993 | 89/93 | Clarendon Hill - Haymarket Station | 1 |
| Green-D | D | Green Line D | 1 |
| 23 | 23 | Ashmont Station - Ruggles Station via Washington Street | 1 |
| 216 | 216 | Houghs Neck - Quincy Center Station via Germantown | 1 |
| 712 | 712 | Point Shirley - Orient Heights Station via Revere Street | 1 |
| 741 | SL1 | Logan Airport Terminals - South Station | 1 |
| 137 | 137 | Reading Depot - Malden Center Station | 1 |
| 713 | 713 | Point Shirley - Orient Heights Station via Winthrop Center | 1 |
| 70 | 70 | Market Place Drive or Waltham Center - University Park | 1 |
| 215 | 215 | Quincy Center Station - Ashmont Station via West Quincy | 1 |
| Green-C | C | Green Line C | 1 |
| 554 | 554 | Waverley Square - Newton Corner | 1 |
| 76 | 76 | Lincoln Lab - Alewife Station | 1 |
| 558 | 558 | Riverside Station - Newton Corner | 1 |
| Shuttle-Generic-Green-C | Green Line C Shuttle | 1 | |
| 41 | 41 | Centre Street & Eliot Street - JFK/UMass Station | 1 |
| 455 | 455 | Salem Depot - Wonderland Station | 1 |
| 21 | 21 | Ashmont Station - Forest Hills Station | 1 |
| 73 | 73 | Waverley Square - Harvard Station | 1 |
| 64 | 64 | Oak Square - Kendall/MIT Station | 1 |
| 93 | 93 | Sullivan Square Station - Downtown via Bunker Hill Street | 1 |
| 116 | 116 | Wonderland Station - Maverick Station | 1 |
| 45 | 45 | Franklin Park - Ruggles Station | 1 |
| Shuttle-Generic-Providence | Providence/Stoughton Line Shuttle | 1 | |
| 132 | 132 | Redstone Shopping Center - Malden Center Station | 1 |
| CR-Foxboro | Foxboro Event Service | 1 | |
| 40 | 40 | Georgetowne - Forest Hills Station | 1 |
| CR-Lowell | Lowell Line | 1 | |
| 1 | 1 | Harvard Square - Nubian Station | 1 |
| CR-Needham | Needham Line | 1 | |
| 60 | 60 | Chestnut Hill - Kenmore Station | 1 |
| 450 | 450 | Salem Depot - Wonderland or Haymarket Station | 1 |
| 195 | 195 | Lemuel Shattuck Hospital - Park Street & Tremont Street | 1 |
| Shuttle-Generic-CommuterRail-South | South Side Commuter Rail Shuttle | 1 | |
| Shuttle-Generic-Green-B | Green Line B Shuttle | 1 | |
| 4 | 4 | North Station - Design Center | 1 |
| 210 | 210 | Quincy Center Station - Fields Corner Station | 1 |
| 75 | 75 | Belmont Center - Harvard via Huron Avenue | 1 |
| 222 | 222 | East Weymouth - Quincy Center Station | 1 |
| 99 | 99 | Woodland Road - Wellington Station | 1 |
| 428 | 428 | Oaklandvale - Haymarket Station | 1 |
| Shuttle-Generic | Shuttle | 1 | |
| 71 | 71 | Watertown Square - Harvard Station | 1 |
| Shuttle-Generic-Red | Red Line Shuttle | 1 | |
| 47 | 47 | Central Square, Cambridge - Broadway Station | 1 |
| 92 | 92 | Sullivan Square Station - Downtown via Main Street | 1 |
| 439 | 439 | Nahant - Wonderland Station | 1 |
| 226 | 226 | Columbian Square - Braintree Station | 1 |
| Shuttle-Generic-Needham | Needham Line Shuttle | 1 | |
| 24 | 24 | Wakefield Avenue & Truman Parkway - Ashmont Station | 1 |
| 65 | 65 | Brighton Center - Kenmore Station | 1 |
| 7 | 7 | City Point - Otis Street & Summer Street | 1 |
| Shuttle-Generic-Red-Ashmont | Red Line Ashmont Shuttle | 1 | |
| 19 | 19 | Fields Corner Station - Kenmore or Ruggles Station | 1 |
| Shuttle-Generic-Green-D | Green Line D Shuttle | 1 | |
| Shuttle-Generic-Newburyport | Newburyport/Rockport Line Shuttle | 1 | |
| 83 | 83 | Rindge Avenue - Central Square, Cambridge | 1 |
| 501 | 501 | Brighton Center - Federal Street & Franklin Street | 1 |
| 112 | 112 | Wellington Station - Wood Island Station | 1 |
| 201 | 201 | Fields Corner Loop via Neponset Avenue | 1 |
| 91 | 91 | Sullivan Square Station - Central Square, Cambridge | 1 |
| 95 | 95 | West Medford or Arlington Center - Sullivan Square Station | 1 |
| 119 | 119 | Northgate Shopping Center - Beachmont Station | 1 |
| 716 | 716 | Canton Village Shoppes - Mattapan Station | 1 |
| Shuttle-Generic-Fitchburg | Fitchburg Line Shuttle | 1 | |
| Orange | Orange Line | 1 | |
| Shuttle-Generic-Lowell | Lowell Line Shuttle | 1 | |
| 61 | 61 | North Waltham - Waltham Center | 1 |
| Boat-F2H | Hingham/Hull Ferry | 1 | |
| Shuttle-Generic-Red-Trunk | Red Line Trunk Shuttle | 1 | |
| 74 | 74 | Belmont Center - Harvard via Concord Avenue | 1 |
| 441 | 441 | Marblehead - Wonderland Station via Paradise Road | 1 |
| 426 | 426 | Central Square, Lynn - Haymarket or Wonderland Station | 1 |
| Shuttle-Generic-Fairmount | Fairmount Line Shuttle | 1 | |
| 451 | 451 | North Beverly Station - Salem Depot | 1 |
| 211 | 211 | Quincy Center Station - Squantum | 1 |
| Shuttle-Generic-Orange | Orange Line Shuttle | 1 | |
| 68 | 68 | Harvard Square - Kendall/MIT Station | 1 |
| CR-Newburyport | Newburyport/Rockport Line | 1 | |
| 96 | 96 | Medford Square - Harvard Station | 1 |
| 42 | 42 | Forest Hills Station - Nubian Station | 1 |
| 742 | SL2 | Design Center - South Station | 1 |
| 109 | 109 | Linden Square - Harvard Square via Sullivan | 1 |
| 556 | 556 | Waltham Highlands - Newton Corner | 1 |
| 43 | 43 | Ruggles Station - Park Street Station | 1 |
| 16 | 16 | Forest Hills Station - Andrew Station or Harbor Point | 1 |
| CR-Kingston | Kingston Line | 1 | |
| 105 | 105 | Malden Center Station - Sullivan Square Station via Newland Street Housing | 1 |
| CR-NewBedford | Fall River/New Bedford Line | 1 | |
| 171 | 171 | Logan Airport Terminals - Nubian Station | 1 |
| 101 | 101 | Malden Center Station - Sullivan Square Station via Winter Hill | 1 |
| Boat-EastBoston | East Boston Ferry | 1 | |
| 225 | 225 | Weymouth Landing - Quincy Center Station | 1 |
| 430 | 430 | Saugus Center - Malden Center Station | 1 |
| 751 | SL4 | Nubian Station - South Station | 1 |
| 110 | 110 | Wonderland Station - Wellington Station | 1 |
| 240 | 240 | Avon Square - Ashmont Station | 1 |
| 59 | 59 | Needham Junction - Watertown Square | 1 |